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In-vivo crystallisation (midguts of a viviparous cockroach) and structure at 2.5 A resolution of a glycosylated, lipid-binding, lipocalin-like protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 In-vivo crystallization 6 300 Spontaneous crystallization inside the midguts of a living viviparous cockroach, pH 6.0, In-vivo crystallization, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.14 42.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.28 α = 99.5 b = 33.22 β = 100.28 c = 40.18 γ = 104.11
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 70 PIXEL DECTRIS PILATUS 2M-F 2013-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 2.7 Photon Factory BL-1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 50 99.6 38.07 20 5421 5421
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.56 96.7 22.43 820
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.49 38.58 4876 546 99.83 0.16159 0.16159 0.15368 0.1549 0.23262 0.2323 RANDOM 17.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.17 -0.05 -0.22 0.38 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.737 r_dihedral_angle_4_deg 21.681 r_dihedral_angle_3_deg 18.433 r_dihedral_angle_1_deg 7.515 r_long_range_B_refined 5.678 r_mcangle_it 2.031 r_angle_refined_deg 1.906 r_scbond_it 1.836 r_mcbond_it 1.181 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.737 r_dihedral_angle_4_deg 21.681 r_dihedral_angle_3_deg 18.433 r_dihedral_angle_1_deg 7.515 r_long_range_B_refined 5.678 r_mcangle_it 2.031 r_angle_refined_deg 1.906 r_scbond_it 1.836 r_mcbond_it 1.181 r_chiral_restr 0.122 r_bond_refined_d 0.013 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1248 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 76
Software Software Software Name Purpose SOLVE phasing REFMAC refinement XDS data reduction XSCALE data scaling