☰ Navigation Tabs
Crystal structure of apocarotenoid oxygenase in the presence of C8E6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BIW PDB ENTRY 2BIW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 PEG 3350, BTP, NH4Cl, C8E6 , VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties Matthews coefficient Solvent content 3.46 64.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.561 α = 90 b = 125.122 β = 90 c = 203.012 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.73080 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.6 75329 75053 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BIW 2.8 48.58 75329 71479 3609 99.68 0.21219 0.21103 0.2146 0.23554 0.2392 RANDOM 51.077
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -0.98 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.798 r_dihedral_angle_3_deg 14.446 r_dihedral_angle_4_deg 14.322 r_dihedral_angle_1_deg 6.392 r_long_range_B_refined 3.667 r_long_range_B_other 3.667 r_scangle_other 2.234 r_mcangle_it 2.109 r_mcangle_other 2.109 r_angle_refined_deg 1.413
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.798 r_dihedral_angle_3_deg 14.446 r_dihedral_angle_4_deg 14.322 r_dihedral_angle_1_deg 6.392 r_long_range_B_refined 3.667 r_long_range_B_other 3.667 r_scangle_other 2.234 r_mcangle_it 2.109 r_mcangle_other 2.109 r_angle_refined_deg 1.413 r_scbond_it 1.323 r_scbond_other 1.323 r_mcbond_it 1.239 r_mcbond_other 1.239 r_angle_other_deg 0.988 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15072 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms 7
Software Software Software Name Purpose XDS data scaling PHASER phasing REFMAC refinement XDS data reduction