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Crystal structure of apocarotenoid oxygenase in the presence of Triton X-100
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 PEG 3350, NH4Cl, Triton X-100, BTP, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties Matthews coefficient Solvent content 3.46 64.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.47 α = 90 b = 125.39 β = 90 c = 202.54 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97930 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.7 203162 200469 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 48.61 203162 190607 9860 98.67 0.17849 0.17717 0.186 0.20467 0.2128 RANDOM 46.673
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 0.56 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.048 r_dihedral_angle_4_deg 14.384 r_dihedral_angle_3_deg 13.048 r_dihedral_angle_1_deg 6.585 r_long_range_B_refined 5.242 r_long_range_B_other 5.229 r_scangle_other 3.573 r_mcangle_it 2.554 r_mcangle_other 2.554 r_scbond_it 2.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.048 r_dihedral_angle_4_deg 14.384 r_dihedral_angle_3_deg 13.048 r_dihedral_angle_1_deg 6.585 r_long_range_B_refined 5.242 r_long_range_B_other 5.229 r_scangle_other 3.573 r_mcangle_it 2.554 r_mcangle_other 2.554 r_scbond_it 2.222 r_scbond_other 2.222 r_mcbond_it 1.691 r_mcbond_other 1.691 r_angle_refined_deg 1.442 r_angle_other_deg 0.746 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15098 Nucleic Acid Atoms Solvent Atoms 875 Heterogen Atoms 6
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction REFMAC phasing