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Crystal structure of the human BST2 cytoplasmic domain and the HIV-1 Vpu cytoplasmic domain bound to the clathrin adaptor protein complex 1 (AP1) core
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 298 Peg 6000, NaCl
Crystal Properties Matthews coefficient Solvent content 3.88 68.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.536 α = 90 b = 160.536 β = 90 c = 118.393 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 99.4 0.07 15.3 3.8 59937 67.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 99.5 1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 50 59937 3036 99.22 0.188 0.1858 0.2293 0.2154 RANDOM 107.107
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -0.96 1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.777 r_dihedral_angle_3_deg 17.102 r_dihedral_angle_4_deg 15.067 r_dihedral_angle_1_deg 4.401 r_angle_refined_deg 1.272 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13918 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection HKL-2000 data scaling PHASER phasing Coot model building REFMAC refinement PDB_EXTRACT data extraction