X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4OQC 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH METHOD8.5291MIXING TWO SOLUTIONS A & B: SOLUTION A: PROTEIN (20 MG/ML) TRIS ACETATE BUFFER 0.05 M PH=8.5. SOLUTION B: TRIS ACETATE BUFFER 0.05 M + SODIUM AZIDE 0.3M. CRYSTALS HARVESTED 2 MONTHS AFTER CRYSTALLIZATION (AGED CRYSTALS), BATCH METHOD, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.9257.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.18α = 90
b = 94.92β = 90
c = 104.53γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MBENT MIRROR2014-01-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.938ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32098.80.0724.7976786668624
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.34990.2174.2

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESIS4OQC1.3204976786668698.80.21080.17620.1762
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
62261.52603
RMS Deviations
KeyRefinement Restraint Deviation
s_angle_d0.075
s_non_zero_chiral_vol0.073
s_anti_bump_dis_restr0.071
s_zero_chiral_vol0.069
s_similar_adp_cmpnt0.06
s_bond_d0.03
s_from_restr_planes0.0291
s_similar_dist
s_rigid_bond_adp_cmpnt
s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2362
Nucleic Acid Atoms
Solvent Atoms239
Heterogen Atoms10

Software

Software
Software NamePurpose
MxCuBEdata collection
SHELXmodel building
SHELXL-97refinement
XDSdata reduction
SCALAdata scaling
TRUNCATEdata scaling
SHELXDEphasing