☰ Navigation Tabs
Crystal structure of Cx-SAM bound CmoB from E. coli in P6122
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1M HEPES:NaOH pH 7.5, 0.2M MgCl2, 30% (v/v) PEG400, 10mM TCEP:HCl, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.84 56.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.134 α = 90 b = 82.134 β = 90 c = 432.516 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 50 99.2 0.144 15.5 8.5 26963 26722
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.69 100 0.993 4 8.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.64 43.08 25243 1337 99.05 0.22086 0.21836 0.2174 0.26947 0.2666 RANDOM 48.595
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.2 0.2 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.045 r_dihedral_angle_4_deg 22.473 r_dihedral_angle_3_deg 17.949 r_long_range_B_refined 9.238 r_long_range_B_other 9.238 r_dihedral_angle_1_deg 7.433 r_scangle_other 7.126 r_mcangle_it 6.731 r_mcangle_other 6.73 r_scbond_it 4.936
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.045 r_dihedral_angle_4_deg 22.473 r_dihedral_angle_3_deg 17.949 r_long_range_B_refined 9.238 r_long_range_B_other 9.238 r_dihedral_angle_1_deg 7.433 r_scangle_other 7.126 r_mcangle_it 6.731 r_mcangle_other 6.73 r_scbond_it 4.936 r_scbond_other 4.936 r_mcbond_it 4.678 r_mcbond_other 4.678 r_angle_refined_deg 1.536 r_angle_other_deg 0.925 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5185 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 70
Software Software Software Name Purpose CBASS data collection MOLREP phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling