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Zebra fish cytochrome P450 17A2 with Progesterone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 50 mM sodium HEPES buffer, 25 mM MgCl2 and 15% (v/v) polyethylene glycol monomethyl ether 3550, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.94 36.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.94 α = 90 b = 78.63 β = 92.03 c = 95.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 17.08 99 0.074 16.4 4.7 22643 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.73 2.81 98.2 0.668 2.2 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 17.08 21459 1159 98.8 0.209 0.205 0.2089 0.283 0.2828 RANDOM 60.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.1 -0.57 -1.98 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.771 r_dihedral_angle_4_deg 22.695 r_dihedral_angle_3_deg 20.057 r_dihedral_angle_1_deg 7.906 r_long_range_B_refined 5.889 r_long_range_B_other 5.889 r_mcangle_it 3.287 r_mcangle_other 3.287 r_scangle_other 3.224 r_scbond_it 1.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.771 r_dihedral_angle_4_deg 22.695 r_dihedral_angle_3_deg 20.057 r_dihedral_angle_1_deg 7.906 r_long_range_B_refined 5.889 r_long_range_B_other 5.889 r_mcangle_it 3.287 r_mcangle_other 3.287 r_scangle_other 3.224 r_scbond_it 1.941 r_scbond_other 1.94 r_mcbond_it 1.901 r_mcbond_other 1.901 r_angle_refined_deg 1.615 r_angle_other_deg 0.869 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6605 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 130
Software Software Software Name Purpose MD2 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling