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Crystal structure of Sulfolobus Cren7-dsDNA(GTGATCAC) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 30% PEG 1500, pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.44 64.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.913 α = 90 b = 77.922 β = 90 c = 104.429 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2010-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.9 0.041 37.6 7.2 14498 14194 1 1 46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 96.3 0.478 3.7 7.4 1354
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LWH 2.3 50 1 13798 13431 716 97.34 0.202 0.202 0.2 0.2023 0.232 0.2273 RANDOM 42.169
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.7 -1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 18.844 r_dihedral_angle_3_deg 14.684 r_dihedral_angle_2_deg 14.038 r_dihedral_angle_1_deg 7.218 r_long_range_B_refined 5.864 r_long_range_B_other 5.825 r_angle_other_deg 4.957 r_mcangle_it 4.054 r_mcangle_other 4.052 r_scangle_other 3.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 18.844 r_dihedral_angle_3_deg 14.684 r_dihedral_angle_2_deg 14.038 r_dihedral_angle_1_deg 7.218 r_long_range_B_refined 5.864 r_long_range_B_other 5.825 r_angle_other_deg 4.957 r_mcangle_it 4.054 r_mcangle_other 4.052 r_scangle_other 3.925 r_scbond_other 2.603 r_scbond_it 2.602 r_mcbond_it 2.596 r_mcbond_other 2.595 r_angle_refined_deg 1.32 r_chiral_restr 0.07 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 926 Nucleic Acid Atoms 644 Solvent Atoms 116 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling