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d(TCGGCGCCGA) with lambda-[Ru(TAP)2(dppz)]2+ soaked in D2O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 291 The drops contained 1 l of 2mM oligonuclotide, 1 l of 4mM rac [Ru(TAP)2(dppz)]Cl2 and 6 l of the following solution; 10% (vol/vol) MPD, 40 mM sodium cacodylate (pH 6.0), 12mM spermine tetra-HCl, 80mM sodium chloride and 20 mM barium chloride. The drop was equilibrated against 1ml of 35% (vol/vol) 2-methyl-2,4-pentanediol (MPD) in H2O , VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.9 57.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.37 α = 90 b = 42.37 β = 90 c = 39.42 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 18.66 99.9 11471 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.21 18.66 11471 10864 568 99.9 0.11 0.109 0.1093 0.125 0.1264 RANDOM 22.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.41 0.82
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 28.452 r_sphericity_bonded 14.099 r_rigid_bond_restr 5.669 r_angle_other_deg 3.753 r_scangle_other 3.408 r_long_range_B_refined 3.383 r_long_range_B_other 3.065 r_angle_refined_deg 2.592 r_scbond_it 2.514 r_scbond_other 2.51
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 28.452 r_sphericity_bonded 14.099 r_rigid_bond_restr 5.669 r_angle_other_deg 3.753 r_scangle_other 3.408 r_long_range_B_refined 3.383 r_long_range_B_other 3.065 r_angle_refined_deg 2.592 r_scbond_it 2.514 r_scbond_other 2.51 r_chiral_restr 0.103 r_gen_planes_refined 0.032 r_bond_refined_d 0.016 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 202 Solvent Atoms 73 Heterogen Atoms 53
Software Software Software Name Purpose GDA data collection SHELXCD phasing REFMAC refinement XDS data reduction SCALA data scaling SHELXE model building