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L-ficolin complexed to glucosamine-6-sulfate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 293 Protien solution: 5.7 mg/ml in 145 mM NaCl, 50 mM triethanolamine-HCl, pH 7.4. Reservoir solution composed of 15% (w/v) PEG 8000, 200 mM Ca acetate and 0.1 M HEPES. Cryoprotection was achieved by adding PEG 400 to the drop just before flash-cooling the crystal in liquid nitrogen, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.58 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.17 α = 90 b = 97.17 β = 90 c = 139.99 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.83 45239 45165 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 19.96 42907 42907 2259 99.83 0.17394 0.17238 0.1812 0.20336 0.2143 RANDOM 21.116
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 -0.02 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.596 r_dihedral_angle_4_deg 18.56 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_1_deg 7.05 r_long_range_B_refined 5.104 r_long_range_B_other 5.085 r_scangle_other 3.956 r_mcangle_other 3.059 r_mcangle_it 2.671 r_scbond_other 2.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.596 r_dihedral_angle_4_deg 18.56 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_1_deg 7.05 r_long_range_B_refined 5.104 r_long_range_B_other 5.085 r_scangle_other 3.956 r_mcangle_other 3.059 r_mcangle_it 2.671 r_scbond_other 2.601 r_scbond_it 2.282 r_angle_refined_deg 1.947 r_mcbond_it 1.756 r_mcbond_other 1.746 r_angle_other_deg 1.535 r_chiral_restr 0.201 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d 0.009 r_gen_planes_other 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5205 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 138
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling