X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3HBR 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5298.150.1M TRIS pH 8.5, 20% ethanol, 2mM avibactam, VAPOR DIFFUSION, SITTING DROP, temperature 298.15K
Crystal Properties
Matthews coefficientSolvent content
2.4149.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 142.039α = 90
b = 142.039β = 90
c = 50.401γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HE2013-06-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08B1-11.00CLSI08B1-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1252.6699.27687176256
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1199.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3HBR252.667303972459382399.270.193210.191670.22293RANDOM34.586
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.47-0.73-1.474.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.733
r_dihedral_angle_4_deg17.131
r_dihedral_angle_3_deg14.882
r_long_range_B_other7.083
r_long_range_B_refined7.077
r_scangle_other6.237
r_dihedral_angle_1_deg4.573
r_scbond_it4.302
r_scbond_other4.299
r_angle_other_deg3.757
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.733
r_dihedral_angle_4_deg17.131
r_dihedral_angle_3_deg14.882
r_long_range_B_other7.083
r_long_range_B_refined7.077
r_scangle_other6.237
r_dihedral_angle_1_deg4.573
r_scbond_it4.302
r_scbond_other4.299
r_angle_other_deg3.757
r_mcangle_it3.723
r_mcangle_other3.723
r_mcbond_it2.793
r_mcbond_other2.793
r_angle_refined_deg2.421
r_chiral_restr0.152
r_gen_planes_other0.031
r_bond_refined_d0.022
r_gen_planes_refined0.016
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7935
Nucleic Acid Atoms
Solvent Atoms385
Heterogen Atoms68

Software

Software
Software NamePurpose
MxDCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling