4UMI

Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4D0V	PDB ENTRY 4D0V CHAIN A

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7.5		10 MM TRIS-HCL, 1.7 M AMMONIUM SULFATE, 0.085 M HEPES SODIUM SALT PH 7.5, 1.7%(V/V) POLYETHYLENE GLYCOL (PEG) 400, 15%(V/V) GLYCEROL

Crystal Properties
Matthews coefficient	Solvent content
1.7	27

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 121.52	α = 90
b = 121.52	β = 90
c = 121.52	γ = 90

Symmetry
Space Group	F 2 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M	KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING	2013-05-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02		Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.33	43	99.5	0.05	18.5	5.8		33985			15.6

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.33	1.36	95.3		0.37	2.2	2.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 4D0V CHAIN A	1.33	42.96	32152	1832	99.53	0.11848	0.11733	0.13	0.13804	0.14	RANDOM	21.225

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.74	2.47	-5.69	-2.73	-2.36	4.47

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_4_deg	25.548
r_dihedral_angle_2_deg	25.168
r_dihedral_angle_3_deg	12.22
r_sphericity_bonded	11.235
r_dihedral_angle_1_deg	6.485
r_rigid_bond_restr	5.279
r_scangle_it	3.865
r_scbond_it	3.427
r_mcangle_it	2.356
r_mcbond_other	1.887
r_mcbond_it	1.864
r_angle_refined_deg	1.614
r_angle_other_deg	0.813
r_symmetry_hbond_refined	0.357
r_symmetry_vdw_refined	0.347
r_nbd_refined	0.252
r_symmetry_hbond_other	0.209
r_nbd_other	0.192
r_nbtor_refined	0.186
r_xyhbond_nbd_refined	0.18
r_symmetry_vdw_other	0.163
r_chiral_restr	0.116
r_nbtor_other	0.088
r_xyhbond_nbd_other	0.037
r_bond_refined_d	0.013
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_sphericity_free

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	859
Nucleic Acid Atoms
Solvent Atoms	151
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing