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The SeMet structure of the family 46 carbohydrate-binding module (CBM46) of endo-beta-1,4-glucanase B (Cel5B) from Bacillus halodurans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.2 M AMMONIUM SULFATE, 30% W/V POLYETHYLENE GLYCOL 4,000, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.85 α = 90 b = 120.85 β = 90 c = 76.38 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 85.45 100 0.12 17.1 19.1 12870
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.6 0.8 1.3 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.3 85.45 12230 629 99.95 0.20639 0.20388 0.2186 0.25449 0.2558 RANDOM 55.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.473 r_dihedral_angle_3_deg 17.668 r_dihedral_angle_4_deg 13.522 r_dihedral_angle_1_deg 10.651 r_scbond_it 5.179 r_mcangle_it 4.931 r_mcbond_it 3.527 r_mcbond_other 3.527 r_angle_refined_deg 1.809 r_angle_other_deg 1.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.473 r_dihedral_angle_3_deg 17.668 r_dihedral_angle_4_deg 13.522 r_dihedral_angle_1_deg 10.651 r_scbond_it 5.179 r_mcangle_it 4.931 r_mcbond_it 3.527 r_mcbond_other 3.527 r_angle_refined_deg 1.809 r_angle_other_deg 1.212 r_chiral_restr 0.119 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1662 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction FAST_DP data scaling PHENIX phasing