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CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH INITIATION FACTOR 1.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J02 PDB ENTRY 2J02
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 50MM MES-KOH PH6.5, 80MM MGCL2, 200MM KCL, 0.495MM PUTRESCEINE, 4.4-5.4% (W/V) PEG20000
Crystal Properties Matthews coefficient Solvent content 4 71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 320.52 α = 90 b = 362.21 β = 109.61 c = 412.11 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS 2010-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.93 100 93 0.15 6.8 3.4 364651 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.93 4.17 61 0.81 2.05 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT PDB ENTRY 2J02 3.93 25 332261 6635 85.1 0.2065 0.2065 0.209 0.2431 0.2427 RANDOM 148.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 22.55 4.908 14.527 -37.076
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_improper_angle_d 1.4 c_angle_deg 1.33835 c_bond_d 0.007318 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.7 c_improper_angle_d 1.4 c_angle_deg 1.33835 c_bond_d 0.007318 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 40937 Nucleic Acid Atoms 37231 Solvent Atoms 552 Heterogen Atoms 96
Software Software Software Name Purpose SHARP model building PHASER model building DM model building CNS model building PHENIX model building CNS refinement XDS data reduction XSCALE data scaling SHARP phasing PHASER phasing DM phasing CNS phasing PHENIX phasing