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Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J00 PDB ENTRY 2J00
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.7 100 MM MES-KOH PH 6.7, 20 MM KCL, 7.4% (W/V) PEG20K
Crystal Properties Matthews coefficient Solvent content 3.14 60.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 204.7 α = 90 b = 229.3 β = 90.17 c = 307 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M DYNAMICALLY BENDABLE MIRROR 2011-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 45 99 0.18 6.42 7.44 274830 1.3 40.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.8 3.9 99 1.4 1.06 7.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J00 3.8 44.9 274819 5622 98.7 0.293 0.293 0.2779 0.351 0.3304 RANDOM 147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -24.15 -13.13 31.81 -7.67
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 29.3 c_improper_angle_d 1.81 c_angle_deg 1.5 c_bond_d 0.01 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 29.3 c_improper_angle_d 1.81 c_angle_deg 1.5 c_bond_d 0.01 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23091 Nucleic Acid Atoms 34161 Solvent Atoms Heterogen Atoms 32
Software Software Software Name Purpose CNS model building CNS refinement XDS data reduction XSCALE data scaling CNS phasing