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Crystal structure of cytochrome P450 CYP107W1 from Streptomyces avermitilis in complex with Oligomycin A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 287 Isopropanol, Ammonium citrate, citric acid
Crystal Properties Matthews coefficient Solvent content 3.61 65.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.812 α = 90 b = 127.812 β = 90 c = 76.584 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 mirror 2013-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.979 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.6 26.2 8.8 19627
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 40.42 16238 891 95.62 0.2191 0.2154 0.2159 0.2885 0.2827 RANDOM 79.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.557 r_dihedral_angle_4_deg 20.473 r_dihedral_angle_3_deg 19.101 r_dihedral_angle_1_deg 8.259 r_mcangle_it 7.2 r_mcbond_it 4.609 r_mcbond_other 4.606 r_angle_refined_deg 1.915 r_angle_other_deg 0.877 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.557 r_dihedral_angle_4_deg 20.473 r_dihedral_angle_3_deg 19.101 r_dihedral_angle_1_deg 8.259 r_mcangle_it 7.2 r_mcbond_it 4.609 r_mcbond_other 4.606 r_angle_refined_deg 1.915 r_angle_other_deg 0.877 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3043 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement SCALEPACK data reduction PDB_EXTRACT data extraction