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Structure of FGFR1 in complex with AZD4547 (N-{3-[2-(3,5-DIMETHOXYPHENYL)ETHYL]-1H-PYRAZOL-5-YL}-4-[(3R,5S)-3,5-DIMETHYLPIPERAZIN-1-YL]BENZAMIDE) at 1.65 angstrom
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NK9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 20% MPEG 5000, 0.1 M sodium cacodylate pH 7.5, 0.2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.35 47.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.486 α = 90 b = 50.517 β = 91.23 c = 201.28 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-04-24 M SINGLE WAVELENGTH 2 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate 2013-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2 2 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 99.8 9.1 8.3 79263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 96.4 4.3 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4NK9 1.65 20 75230 4002 99.69 0.22621 0.22511 0.2326 0.24678 0.2535 RANDOM 31.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.85 0.72 4.52 -2.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.501 r_dihedral_angle_4_deg 13.494 r_dihedral_angle_3_deg 11.586 r_dihedral_angle_1_deg 5.419 r_long_range_B_refined 3.419 r_long_range_B_other 3.387 r_angle_refined_deg 1.414 r_scangle_other 1.004 r_mcangle_it 0.962 r_mcangle_other 0.962
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.501 r_dihedral_angle_4_deg 13.494 r_dihedral_angle_3_deg 11.586 r_dihedral_angle_1_deg 5.419 r_long_range_B_refined 3.419 r_long_range_B_other 3.387 r_angle_refined_deg 1.414 r_scangle_other 1.004 r_mcangle_it 0.962 r_mcangle_other 0.962 r_angle_other_deg 0.831 r_scbond_it 0.612 r_scbond_other 0.599 r_mcbond_it 0.556 r_mcbond_other 0.556 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4202 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XDS data scaling Aimless data scaling PHASER phasing