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Crystal structure of PRMT5:MEP50 with EPZ015666 and SAH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 293 0.2 M Sodium acetate, 0.1 M Sodium citrate pH 6.1, 10% w/v PEG 4000
Crystal Properties Matthews coefficient Solvent content 3 58.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.403 α = 90 b = 138.065 β = 90 c = 178.252 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.05 50 95.1 0.148 5.8 5.8 23283
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.05 3.16 75.8 0.653 5.3 1828
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.05 50 21785 1172 93.66 0.2169 0.2141 0.2157 0.2737 0.2752 RANDOM 83.617
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 16.73 -5.66 -11.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.967 r_dihedral_angle_3_deg 15.069 r_dihedral_angle_4_deg 14.084 r_dihedral_angle_1_deg 5.144 r_mcangle_it 3.633 r_mcbond_it 2.054 r_scbond_it 1.681 r_angle_refined_deg 0.927 r_chiral_restr 0.06 r_bond_refined_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.967 r_dihedral_angle_3_deg 15.069 r_dihedral_angle_4_deg 14.084 r_dihedral_angle_1_deg 5.144 r_mcangle_it 3.633 r_mcbond_it 2.054 r_scbond_it 1.681 r_angle_refined_deg 0.927 r_chiral_restr 0.06 r_bond_refined_d 0.004 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7391 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 54
Software Software Software Name Purpose HKL-2000 data reduction REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling REFMAC phasing