X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1JBZEGFP PDB entry 1JBZ, 6-helix motif from alphaRep4 PDB entry 3LTJ
experimental modelPDB 3LTJEGFP PDB entry 1JBZ, 6-helix motif from alphaRep4 PDB entry 3LTJ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.929350 mM tricine pH 6.9, 25% PEG4K
Crystal Properties
Matthews coefficientSolvent content
2.2445.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.52α = 90
b = 71.55β = 100.72
c = 179.2γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2014-03-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.97918SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.446.796.50.110.853.517746
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.43.680.20.542.032.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTEGFP PDB entry 1JBZ, 6-helix motif from alphaRep4 PDB entry 3LTJ3.446.71685888896.480.213270.209180.2919RANDOM118.154
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.486.92-3.862.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.925
r_long_range_B_refined19.697
r_long_range_B_other19.696
r_dihedral_angle_3_deg19.268
r_dihedral_angle_4_deg16.988
r_scangle_other14.911
r_mcangle_it14.461
r_mcangle_other14.459
r_mcbond_it9.367
r_mcbond_other9.367
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.925
r_long_range_B_refined19.697
r_long_range_B_other19.696
r_dihedral_angle_3_deg19.268
r_dihedral_angle_4_deg16.988
r_scangle_other14.911
r_mcangle_it14.461
r_mcangle_other14.459
r_mcbond_it9.367
r_mcbond_other9.367
r_scbond_it9.269
r_scbond_other9.268
r_dihedral_angle_1_deg5.399
r_angle_refined_deg1.442
r_angle_other_deg0.982
r_chiral_restr0.068
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.005
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9144
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing