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Structure of Tobacco streak virus coat protein dimer at 2.4 Angstroms resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 12% PEG 8000, 10% glycerol, 0.5M potassium chloride
Crystal Properties Matthews coefficient Solvent content 3.22 65.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.04 α = 90 b = 69.98 β = 105.51 c = 103.44 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97856 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 99.673 97.8 0.095 0.101 0.036 16.3 7.8 54445 54445
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 97.2 0.692 0.692 0.264 3.2 7.8 7822
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 99.67 51665 2765 97.51 0.2093 0.2075 0.2109 0.2443 0.2469 RANDOM 47.479
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.88 r_dihedral_angle_3_deg 14.394 r_dihedral_angle_4_deg 11.072 r_dihedral_angle_1_deg 7.614 r_mcangle_it 6.624 r_mcbond_it 4.418 r_mcbond_other 4.411 r_angle_refined_deg 1.724 r_angle_other_deg 1.492 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.88 r_dihedral_angle_3_deg 14.394 r_dihedral_angle_4_deg 11.072 r_dihedral_angle_1_deg 7.614 r_mcangle_it 6.624 r_mcbond_it 4.418 r_mcbond_other 4.411 r_angle_refined_deg 1.724 r_angle_other_deg 1.492 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_bond_other_d 0.009 r_gen_planes_other 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6695 Nucleic Acid Atoms Solvent Atoms 427 Heterogen Atoms 4
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction PHENIX phasing