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1.1 Angstrom resolution X-ray Crystallographic Structure of Psudoazurin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BQK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 30% PEG 4000, 0.1 M Tris, 0.1M magnesium chloride, 5% Glycerol
Crystal Properties Matthews coefficient Solvent content 2.28 45.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.019 α = 90 b = 63.2 β = 90 c = 67.045 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2010-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 97.1 0.06 0.34 7 47290
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 99.6 4 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BQK 1.1 13.04 44879 2387 97.1 0.14951 0.14758 0.1462 0.18571 0.1833 RANDOM 18.775
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.19 0.06
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 61.556 r_dihedral_angle_2_deg 40.197 r_sphericity_bonded 28.171 r_dihedral_angle_3_deg 12.882 r_rigid_bond_restr 11.099 r_long_range_B_refined 8.835 r_dihedral_angle_1_deg 6.969 r_dihedral_angle_4_deg 6.427 r_scbond_it 6.064 r_angle_refined_deg 2.418
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 61.556 r_dihedral_angle_2_deg 40.197 r_sphericity_bonded 28.171 r_dihedral_angle_3_deg 12.882 r_rigid_bond_restr 11.099 r_long_range_B_refined 8.835 r_dihedral_angle_1_deg 6.969 r_dihedral_angle_4_deg 6.427 r_scbond_it 6.064 r_angle_refined_deg 2.418 r_mcangle_it 1.946 r_mcbond_it 1.655 r_chiral_restr 0.139 r_bond_refined_d 0.025 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 911 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection