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Bovine heart mitochondrial F1-ATPase inhibited by AMP-PNP and ADP in the presence of thiophosphate.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CK3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 8.2 295 PEG 6000, sodium chloride, magnesium chloride, Tris-HCl, AMP-PNP, ADP, sodium monothiophosphate
Crystal Properties Matthews coefficient Solvent content 2.27 45.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.353 α = 90 b = 123.052 β = 90 c = 261.276 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 76.52 95.4 0.171 0.123 0.884 6.4 2.6 59186 53.48
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.18 96.1 0.649 0.459 0.547 2.2 2.7 4360
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2CK3 3.1 76.5 55823 3000 94.19 0.2287 0.2263 0.224 0.2734 0.2657 RANDOM 75.741
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.31 -0.1 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.133 r_dihedral_angle_3_deg 11.832 r_dihedral_angle_4_deg 11.145 r_dihedral_angle_1_deg 5.158 r_mcangle_it 2.46 r_mcbond_it 1.376 r_mcbond_other 1.376 r_angle_refined_deg 1.038 r_angle_other_deg 0.837 r_chiral_restr 0.055
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.133 r_dihedral_angle_3_deg 11.832 r_dihedral_angle_4_deg 11.145 r_dihedral_angle_1_deg 5.158 r_mcangle_it 2.46 r_mcbond_it 1.376 r_mcbond_other 1.376 r_angle_refined_deg 1.038 r_angle_other_deg 0.837 r_chiral_restr 0.055 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24623 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 167
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement Coot model building PDB_EXTRACT data extraction