X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4ZHG 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4298NaCl, Li2SO4, Acetate, Ammonium Sulfate
Crystal Properties
Matthews coefficientSolvent content
3.1460.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.676α = 90
b = 117.775β = 90
c = 121.203γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2014-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.455098.80.1350.150.0647.64.956438
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.452.491000.4630.5130.2160.87652806

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4ZHG2.455053541285298.780.20390.20290.2241RANDOM29.413
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.440.24-0.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.546
r_dihedral_angle_4_deg16.824
r_dihedral_angle_3_deg15.921
r_dihedral_angle_1_deg7.83
r_mcangle_it2.752
r_mcbond_it1.702
r_mcbond_other1.699
r_angle_refined_deg0.972
r_angle_other_deg0.731
r_chiral_restr0.064
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.546
r_dihedral_angle_4_deg16.824
r_dihedral_angle_3_deg15.921
r_dihedral_angle_1_deg7.83
r_mcangle_it2.752
r_mcbond_it1.702
r_mcbond_other1.699
r_angle_refined_deg0.972
r_angle_other_deg0.731
r_chiral_restr0.064
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.004
r_bond_other_d0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8484
Nucleic Acid Atoms
Solvent Atoms252
Heterogen Atoms404

Software

Software
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
REFMACphasing
HKL-2000data reduction