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Crystal Structure of a Complex formed between FLD194 Fab and Transmissible Mutant H5 Haemagglutinin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BH2 PDB ENTRIES 4BH2, 3ZTN experimental model PDB 3ZTN PDB ENTRIES 4BH2, 3ZTN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M BIS-TRIS PH 7.5, 10% PEG 4000, 16% ISOPROPANOL
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.75 α = 78.67 b = 87.7 β = 84.66 c = 100.9 γ = 73.91
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 83.33 91.4 0.06 13.1 3.7 57328 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.89 2.99 78.9 0.58 1.9 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 4BH2, 3ZTN 2.89 83.33 54427 2901 91.43 0.24547 0.24381 0.2461 0.27689 0.2779 RANDOM 60.583
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.46 -0.36 -0.12 0.31 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.69 r_dihedral_angle_3_deg 13.97 r_dihedral_angle_4_deg 11.916 r_dihedral_angle_1_deg 4.714 r_angle_refined_deg 0.845 r_angle_other_deg 0.652 r_mcangle_it 0.363 r_scbond_it 0.207 r_mcbond_it 0.191 r_mcbond_other 0.191
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.69 r_dihedral_angle_3_deg 13.97 r_dihedral_angle_4_deg 11.916 r_dihedral_angle_1_deg 4.714 r_angle_refined_deg 0.845 r_angle_other_deg 0.652 r_mcangle_it 0.363 r_scbond_it 0.207 r_mcbond_it 0.191 r_mcbond_other 0.191 r_chiral_restr 0.051 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14491 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing