☰ Navigation Tabs
Structure of GDP bound BipA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20% (W/V) PEG3350, 0.2 M SODIUM FLUORIDE
Crystal Properties Matthews coefficient Solvent content 2.14 42.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 241.946 α = 90 b = 241.946 β = 90 c = 241.946 γ = 90
Symmetry Space Group I 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 47.45 99.6 0.17 14.96 17.8 10596 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 3.8 47.45 10584 1176 96.13 0.25426 0.24779 0.2678 0.31268 0.3213 RANDOM 240.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.611 r_long_range_B_other 28.578 r_long_range_B_refined 28.573 r_mcangle_it 21.151 r_mcangle_other 21.147 r_dihedral_angle_3_deg 19.577 r_dihedral_angle_4_deg 19.541 r_scangle_other 18.312 r_mcbond_it 12.884 r_mcbond_other 12.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.611 r_long_range_B_other 28.578 r_long_range_B_refined 28.573 r_mcangle_it 21.151 r_mcangle_other 21.147 r_dihedral_angle_3_deg 19.577 r_dihedral_angle_4_deg 19.541 r_scangle_other 18.312 r_mcbond_it 12.884 r_mcbond_other 12.884 r_scbond_it 10.561 r_scbond_other 10.556 r_dihedral_angle_1_deg 8.58 r_angle_refined_deg 1.521 r_angle_other_deg 1.066 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4138 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling