☰ Navigation Tabs
Structure of a novel carbohydrate binding module from Ruminococcus flavefaciens FD-1 endoglucanase Cel5A solved at the As edge
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 20 MG/ML PROTEIN IN.2 M SODIUM ACETATE, 0.1 M CACODYLIC ACID PH 6.5, 30%(W/V) POLYETHYLENE GLYCOL 8000. 30%(V/V) GLYCEROL ADDED TO THE CRYSTALLIZATION BUFFER AS CRYOPROTECTANT
Crystal Properties Matthews coefficient Solvent content 1.85 34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.393 α = 90 b = 45.214 β = 90 c = 49.563 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 33.4 99.5 0.06 22.1 7 25196
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.34 98.6 0.15 8.4 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.29 33.4 23770 1250 99.5 0.12655 0.12592 0.14 0.13829 0.1527 RANDOM 12.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.18 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.886 r_sphericity_free 24.251 r_dihedral_angle_3_deg 10.754 r_dihedral_angle_4_deg 8.942 r_sphericity_bonded 7.929 r_dihedral_angle_1_deg 7.599 r_rigid_bond_restr 3.169 r_angle_refined_deg 1.903 r_mcangle_it 1.635 r_scbond_it 1.631
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.886 r_sphericity_free 24.251 r_dihedral_angle_3_deg 10.754 r_dihedral_angle_4_deg 8.942 r_sphericity_bonded 7.929 r_dihedral_angle_1_deg 7.599 r_rigid_bond_restr 3.169 r_angle_refined_deg 1.903 r_mcangle_it 1.635 r_scbond_it 1.631 r_mcbond_it 1.145 r_mcbond_other 1.132 r_angle_other_deg 1.012 r_chiral_restr 0.128 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 786 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 29
Software Software Software Name Purpose XDS data reduction Aimless data scaling SHELX phasing PHASER phasing REFMAC refinement