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The 0.90 angstrom structure (I222) of glucose isomerase crystallized in high-strength agarose hydrogel
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7 293 0.1M Tris-HCl (pH 7.0), 10% (v/v) MPD, 0.1M Ca acetate
Crystal Properties Matthews coefficient Solvent content 2.71 54.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.268 α = 90 b = 97.588 β = 90 c = 102.49 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2008-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 0.70000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.9 50 95.1 0.073 11.6 3 325304
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.9 0.92 94.3 0.354 2.38 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 0.9 50 300000 16000 95.11 0.11683 0.11628 0.1152 0.12735 0.1256 RANDOM 9.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.13 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.326 r_sphericity_free 17.766 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 11.994 r_rigid_bond_restr 11.59 r_dihedral_angle_1_deg 5.823 r_sphericity_bonded 5.589 r_long_range_B_refined 2.42 r_angle_other_deg 2.328 r_scangle_other 2.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.326 r_sphericity_free 17.766 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 11.994 r_rigid_bond_restr 11.59 r_dihedral_angle_1_deg 5.823 r_sphericity_bonded 5.589 r_long_range_B_refined 2.42 r_angle_other_deg 2.328 r_scangle_other 2.182 r_angle_refined_deg 2.122 r_long_range_B_other 1.954 r_scbond_it 1.913 r_scbond_other 1.905 r_mcangle_other 1.001 r_mcangle_it 0.976 r_mcbond_it 0.849 r_mcbond_other 0.828 r_chiral_restr 0.123 r_bond_refined_d 0.023 r_gen_planes_refined 0.014 r_gen_planes_other 0.011 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3042 Nucleic Acid Atoms Solvent Atoms 515 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling MOLREP phasing