☰ Navigation Tabs
Serine/threonine-protein kinase pim-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 291 0.4 M potassium sodium tartrate tetrahydrate
Crystal Properties Matthews coefficient Solvent content 3.46 64.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.37 α = 90 b = 99.37 β = 90 c = 80.68 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315r 2014-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97915 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 58.86 100 19.2 10.6 9182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 100 6.3 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 58.86 8724 437 99.98 0.17764 0.17428 0.1821 0.24575 0.2478 RANDOM 70
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.817 r_dihedral_angle_3_deg 17.868 r_dihedral_angle_4_deg 16.468 r_long_range_B_refined 11.341 r_long_range_B_other 11.34 r_scangle_other 8.163 r_mcangle_it 8.036 r_mcangle_other 8.033 r_dihedral_angle_1_deg 7.108 r_scbond_it 5.378
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.817 r_dihedral_angle_3_deg 17.868 r_dihedral_angle_4_deg 16.468 r_long_range_B_refined 11.341 r_long_range_B_other 11.34 r_scangle_other 8.163 r_mcangle_it 8.036 r_mcangle_other 8.033 r_dihedral_angle_1_deg 7.108 r_scbond_it 5.378 r_scbond_other 5.376 r_mcbond_it 5.344 r_mcbond_other 5.344 r_angle_refined_deg 1.704 r_angle_other_deg 1.013 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2183 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data scaling PHENIX phasing