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Crystal structure of MOR04252, a neutralizing anti-human GM-CSF antibody Fab fragment in complex with human GM-CSF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 293 100 mM sodium acetate, pH 4.0-4.3, 39-42 % (w/v) PEG 400, 30 mg/mL protein
Crystal Properties Matthews coefficient Solvent content 2.62 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.822 α = 90 b = 97.853 β = 90 c = 192.667 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-01-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 96.22 98 0.075 16.74 5.6 42619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.77 98 0.715 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 96.22 40852 897 97.96 0.23231 0.23155 0.26636 0.2492 RANDOM 67.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.43 9.97 -4.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.99 r_dihedral_angle_4_deg 17.505 r_dihedral_angle_3_deg 12.504 r_dihedral_angle_1_deg 6.051 r_scangle_it 3.048 r_scbond_it 2.174 r_mcangle_it 1.512 r_angle_refined_deg 1.146 r_mcbond_it 1.141 r_angle_other_deg 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.99 r_dihedral_angle_4_deg 17.505 r_dihedral_angle_3_deg 12.504 r_dihedral_angle_1_deg 6.051 r_scangle_it 3.048 r_scbond_it 2.174 r_mcangle_it 1.512 r_angle_refined_deg 1.146 r_mcbond_it 1.141 r_angle_other_deg 0.884 r_mcbond_other 0.195 r_nbtor_refined 0.154 r_nbd_refined 0.151 r_nbd_other 0.135 r_symmetry_vdw_refined 0.134 r_symmetry_vdw_other 0.103 r_xyhbond_nbd_refined 0.093 r_symmetry_hbond_refined 0.09 r_nbtor_other 0.072 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8096 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 14
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing