X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.2M calcium acetate, 0.1M imidazole pH8.0, 20% PEG 1000, 10mM UDP-3-O-(R-3-hydroxydecanoyl)-GlcNAc
Crystal Properties
Matthews coefficientSolvent content
2.244.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.963α = 90
b = 83.328β = 90
c = 220.369γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80CCDRAYONIX MX300HS2015-04-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3110.1898.526.276.465433

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.3110.1857656303891.040.19580.193160.24505RANDOM32.049
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.20.34-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.906
r_dihedral_angle_4_deg22.103
r_dihedral_angle_3_deg16.233
r_dihedral_angle_1_deg5.34
r_long_range_B_other5.101
r_long_range_B_refined5.1
r_scangle_other3.818
r_angle_other_deg3.743
r_mcangle_it3.598
r_mcangle_other3.597
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.906
r_dihedral_angle_4_deg22.103
r_dihedral_angle_3_deg16.233
r_dihedral_angle_1_deg5.34
r_long_range_B_other5.101
r_long_range_B_refined5.1
r_scangle_other3.818
r_angle_other_deg3.743
r_mcangle_it3.598
r_mcangle_other3.597
r_scbond_it2.578
r_scbond_other2.576
r_mcbond_it2.527
r_mcbond_other2.527
r_angle_refined_deg1.816
r_chiral_restr0.111
r_bond_refined_d0.019
r_gen_planes_other0.009
r_gen_planes_refined0.006
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11663
Nucleic Acid Atoms
Solvent Atoms231
Heterogen Atoms209

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
SCALEPACKdata scaling