X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4HBT 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52980.2M ammonium sulfate, 0.1M MES pH6.5, 30% PEG5K monomethyl ether
Crystal Properties
Matthews coefficientSolvent content
2.550.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.12α = 90
b = 61.83β = 103.98
c = 73.07γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002014-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-11.00CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.730.9795.411.72.514478

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4HBT2.730.971371376195.30.1890.1870.227RANDOM27.48
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.360.130.46-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.442
r_dihedral_angle_3_deg16.674
r_dihedral_angle_4_deg16.048
r_dihedral_angle_1_deg5.694
r_long_range_B_refined5.487
r_long_range_B_other5.486
r_scangle_other4.297
r_angle_other_deg3.879
r_mcangle_it3.182
r_mcangle_other3.181
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.442
r_dihedral_angle_3_deg16.674
r_dihedral_angle_4_deg16.048
r_dihedral_angle_1_deg5.694
r_long_range_B_refined5.487
r_long_range_B_other5.486
r_scangle_other4.297
r_angle_other_deg3.879
r_mcangle_it3.182
r_mcangle_other3.181
r_scbond_it2.674
r_scbond_other2.673
r_mcbond_other2.041
r_mcbond_it2.04
r_angle_refined_deg1.256
r_chiral_restr0.092
r_gen_planes_refined0.013
r_bond_refined_d0.01
r_gen_planes_other0.01
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3878
Nucleic Acid Atoms
Solvent Atoms85
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing