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Fasciola hepatica calcium binding protein FhCaBP2: Structure of the dynein light chain-like domain. P41212 mercury derivative.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 10 MM TRIS-HCL PH 8.5, 50 MM SODIUM CHLORIDE 20 % (W/V) PEG 3350, 0.2 M SODIUM TARTRATE
Crystal Properties Matthews coefficient Solvent content 3.2 61.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.88 α = 90 b = 59.88 β = 90 c = 81.32 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M ELLIPTICALLY BENT VERTICAL AND HORIZONTAL FOCUSSING MIRRORS 2015-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 23 99.9 0.12 12 9.6 7026 30.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.47 4.5 9.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.3 22.83 6289 702 99.81 0.1965 0.19132 0.2047 0.24051 0.2415 RANDOM 36.662
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.12 1.12 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.922 r_dihedral_angle_3_deg 17.164 r_dihedral_angle_4_deg 15.187 r_dihedral_angle_1_deg 6.042 r_scangle_it 5.003 r_mcangle_it 4.531 r_scbond_it 2.988 r_mcbond_other 2.67 r_mcbond_it 2.668 r_angle_refined_deg 1.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.922 r_dihedral_angle_3_deg 17.164 r_dihedral_angle_4_deg 15.187 r_dihedral_angle_1_deg 6.042 r_scangle_it 5.003 r_mcangle_it 4.531 r_scbond_it 2.988 r_mcbond_other 2.67 r_mcbond_it 2.668 r_angle_refined_deg 1.469 r_angle_other_deg 0.948 r_symmetry_hbond_refined 0.258 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.203 r_symmetry_vdw_other 0.182 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.176 r_nbd_other 0.149 r_xyhbond_nbd_other 0.094 r_chiral_restr 0.084 r_nbtor_other 0.079 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 799 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling autoSHARP phasing