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Pseudomonas aeruginosa HDAH bound to acetate.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZZ0 PDB ENTRY 1ZZ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.08 40.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.39 α = 90 b = 81.39 β = 90 c = 205.85 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 75.69 100 0.28 5.9 11.5 77011 2.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 97.7 1.09 2.4 11.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ZZ0 1.7 75.69 73057 3852 99.94 0.13677 0.13427 0.1486 0.18403 0.1906 RANDOM 17.061
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.5 0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.632 r_sphericity_free 32.491 r_dihedral_angle_4_deg 17.02 r_dihedral_angle_3_deg 12.657 r_sphericity_bonded 8.774 r_dihedral_angle_1_deg 5.873 r_scbond_it 2.725 r_rigid_bond_restr 2.346 r_mcangle_it 2.148 r_mcbond_it 1.711
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.632 r_sphericity_free 32.491 r_dihedral_angle_4_deg 17.02 r_dihedral_angle_3_deg 12.657 r_sphericity_bonded 8.774 r_dihedral_angle_1_deg 5.873 r_scbond_it 2.725 r_rigid_bond_restr 2.346 r_mcangle_it 2.148 r_mcbond_it 1.711 r_mcbond_other 1.706 r_angle_refined_deg 1.508 r_angle_other_deg 1.226 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5683 Nucleic Acid Atoms Solvent Atoms 535 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing