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Leishmania major N-myristoyltransferase in complex with a quinoline inhibitor (compound 19).
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 30% PEG 1500, 0.2 M NACL, 0.1 M NA CACODYLATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.718 α = 90 b = 90.651 β = 112.72 c = 52.913 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2012-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 49 98.8 0.06 10 3.8 63023 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.55 97.5 0.76 1.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.52 48.81 59892 3118 98.79 0.17586 0.17362 0.21942 0.2376 RANDOM 24.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.1 0.02 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.397 r_dihedral_angle_4_deg 19.544 r_dihedral_angle_3_deg 15.568 r_dihedral_angle_1_deg 6.164 r_mcangle_it 4.004 r_scbond_it 3.603 r_mcbond_it 2.796 r_angle_refined_deg 2.346 r_chiral_restr 0.163 r_bond_refined_d 0.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.397 r_dihedral_angle_4_deg 19.544 r_dihedral_angle_3_deg 15.568 r_dihedral_angle_1_deg 6.164 r_mcangle_it 4.004 r_scbond_it 3.603 r_mcbond_it 2.796 r_angle_refined_deg 2.346 r_chiral_restr 0.163 r_bond_refined_d 0.025 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 381 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling