☰ Navigation Tabs
Crystal structure of an IclR homolog from Microbacterium sp. strain HM58-2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 8 293 1M (NH4)2HPO4
Crystal Properties Matthews coefficient Solvent content 2.51 50.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.889 α = 90 b = 155.375 β = 90 c = 83.262 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 PIXEL DECTRIS PILATUS3 S 6M 2015-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.038 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.9 24.9 6.7 69549
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 43.6 66018 3489 98.44 0.22763 0.22688 0.2309 0.24187 0.2432 RANDOM 39.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.22 0.37 -1.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.725 r_dihedral_angle_4_deg 18.782 r_dihedral_angle_3_deg 15.474 r_dihedral_angle_1_deg 5.746 r_long_range_B_refined 4.929 r_long_range_B_other 4.929 r_angle_other_deg 3.675 r_scangle_other 3.314 r_mcangle_it 2.773 r_mcangle_other 2.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.725 r_dihedral_angle_4_deg 18.782 r_dihedral_angle_3_deg 15.474 r_dihedral_angle_1_deg 5.746 r_long_range_B_refined 4.929 r_long_range_B_other 4.929 r_angle_other_deg 3.675 r_scangle_other 3.314 r_mcangle_it 2.773 r_mcangle_other 2.773 r_scbond_it 1.973 r_scbond_other 1.969 r_mcbond_it 1.668 r_mcbond_other 1.667 r_angle_refined_deg 1.462 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7342 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling CRANK2 phasing