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Mdm12 from K. lactis (1-239), Lys residues are uniformly dimethyl modified
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.26M NaH2PO4, 0.14M K2HPO4 pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.65 53.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.868 α = 90.01 b = 48.524 β = 91.5 c = 130.126 γ = 90.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-10-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 97.1 11.3 3.8 527803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.26 50 45717 2438 97.06 0.25248 0.2507 0.2552 0.28615 0.2869 RANDOM 43.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.4 -0.41 -0.53 -1.42 -0.51 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.963 r_dihedral_angle_3_deg 19.146 r_dihedral_angle_4_deg 17.51 r_long_range_B_refined 8.044 r_long_range_B_other 8.044 r_dihedral_angle_1_deg 6.985 r_scangle_other 5.714 r_mcangle_other 4.801 r_mcangle_it 4.8 r_scbond_it 3.678
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.963 r_dihedral_angle_3_deg 19.146 r_dihedral_angle_4_deg 17.51 r_long_range_B_refined 8.044 r_long_range_B_other 8.044 r_dihedral_angle_1_deg 6.985 r_scangle_other 5.714 r_mcangle_other 4.801 r_mcangle_it 4.8 r_scbond_it 3.678 r_scbond_other 3.678 r_mcbond_it 3.114 r_mcbond_other 3.109 r_angle_other_deg 2.073 r_angle_refined_deg 2.003 r_chiral_restr 0.107 r_bond_refined_d 0.014 r_bond_other_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6714 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 200
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing