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DNA targeting ADP-ribosyltransferase Pierisin-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.1M Tris-HCl pH8.0, 20% (v/v) MPD
Crystal Properties Matthews coefficient Solvent content 3.07 59.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.72 α = 90 b = 134.72 β = 90 c = 73.12 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 2008-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 98.8 36.18 9.89 70003
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 49.542 57276 3075 99.91 0.20377 0.20294 0.2194 0.2256 RANDOM 24.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.13 -0.26 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.353 r_dihedral_angle_4_deg 13.425 r_dihedral_angle_3_deg 11.967 r_dihedral_angle_1_deg 6.164 r_long_range_B_refined 4.313 r_long_range_B_other 4.313 r_mcangle_it 1.494 r_mcangle_other 1.494 r_angle_refined_deg 1.147 r_scangle_other 1.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.353 r_dihedral_angle_4_deg 13.425 r_dihedral_angle_3_deg 11.967 r_dihedral_angle_1_deg 6.164 r_long_range_B_refined 4.313 r_long_range_B_other 4.313 r_mcangle_it 1.494 r_mcangle_other 1.494 r_angle_refined_deg 1.147 r_scangle_other 1.131 r_angle_other_deg 0.879 r_mcbond_it 0.808 r_mcbond_other 0.807 r_scbond_it 0.631 r_scbond_other 0.63 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3655 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing