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Erwinia chrysanthemi L-asparaginase E63Q mutation + Aspartic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O7J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 285 0.1M HEPES, pH 7.5 and 24% of PEG MME 2000
Crystal Properties Matthews coefficient Solvent content 2.16 43.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.893 α = 90 b = 87.885 β = 90 c = 175.992 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2015-10-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.008264 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 88 97.2 0.115 0.997 16.88 5.9 74069 -3 19.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.18 83.5 0.485 4.08
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O7J 2.05 30 69755 3563 96.22 0.1757 0.1739 0.1823 0.2093 0.2146 RANDOM 20.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.16 0.52 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.368 r_dihedral_angle_4_deg 15.767 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 6.142 r_mcangle_it 2.624 r_mcbond_it 1.649 r_mcbond_other 1.648 r_angle_refined_deg 1.584 r_angle_other_deg 1.299 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.368 r_dihedral_angle_4_deg 15.767 r_dihedral_angle_3_deg 12.829 r_dihedral_angle_1_deg 6.142 r_mcangle_it 2.624 r_mcbond_it 1.649 r_mcbond_other 1.648 r_angle_refined_deg 1.584 r_angle_other_deg 1.299 r_chiral_restr 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.008 r_gen_planes_other 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9784 Nucleic Acid Atoms Solvent Atoms 976 Heterogen Atoms 36
Software Software Software Name Purpose XDS data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction