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Caldalaklibacillus thermarum F1-ATPase (epsilon mutant)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5HKK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.6 295 PEG 4600, Bis-Tris, Tris-HCl, glycerol, MgCl2, ADP, NaCl
Crystal Properties Matthews coefficient Solvent content 2.77 55.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.24 α = 90 b = 131.29 β = 108.2 c = 212.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-11-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87260 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 201.4 93.9 0.056 0.994 10.1 1.7 220174
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 87.2 0.273 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5HKK 2.6 201.4 209085 11066 92.9 0.2138 0.2126 0.216 0.2376 0.2404 RANDOM 36.537
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.28 0.71 -0.91 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.592 r_dihedral_angle_4_deg 12.307 r_dihedral_angle_3_deg 11.625 r_dihedral_angle_1_deg 5 r_mcangle_it 1.113 r_angle_refined_deg 1.057 r_angle_other_deg 0.845 r_mcbond_it 0.6 r_mcbond_other 0.6 r_chiral_restr 0.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.592 r_dihedral_angle_4_deg 12.307 r_dihedral_angle_3_deg 11.625 r_dihedral_angle_1_deg 5 r_mcangle_it 1.113 r_angle_refined_deg 1.057 r_angle_other_deg 0.845 r_mcbond_it 0.6 r_mcbond_other 0.6 r_chiral_restr 0.056 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49468 Nucleic Acid Atoms Solvent Atoms 1111 Heterogen Atoms 440
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing