☰ Navigation Tabs
HDAC2 WITH LIGAND BRD7232
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 PEG 400, potassium phosphate
Crystal Properties Matthews coefficient Solvent content 2.51 51.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.195 α = 90 b = 97.473 β = 90 c = 139.254 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M Dynamically bendable mirror 2013-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 79.85 100 0.08 2.81 8.2 133389
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.76 100 0.934 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 48.736 132391 998 99.98 0.17993 0.17978 0.1859 0.2004 0.2058 RANDOM 27.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 1.51 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.805 r_dihedral_angle_4_deg 17.925 r_dihedral_angle_3_deg 11.221 r_long_range_B_refined 6.641 r_long_range_B_other 6.377 r_dihedral_angle_1_deg 6.316 r_scangle_other 1.95 r_angle_refined_deg 1.395 r_scbond_it 1.225 r_scbond_other 1.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.805 r_dihedral_angle_4_deg 17.925 r_dihedral_angle_3_deg 11.221 r_long_range_B_refined 6.641 r_long_range_B_other 6.377 r_dihedral_angle_1_deg 6.316 r_scangle_other 1.95 r_angle_refined_deg 1.395 r_scbond_it 1.225 r_scbond_other 1.224 r_angle_other_deg 1.182 r_mcangle_it 1.109 r_mcangle_other 1.109 r_mcbond_it 0.664 r_mcbond_other 0.661 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8870 Nucleic Acid Atoms Solvent Atoms 839 Heterogen Atoms 279
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement MOLREP phasing