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Crystal structure of Csd1-Csd2 dimer II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 296 HEPES, Jeffamine ED-2001
Crystal Properties Matthews coefficient Solvent content 1.67 26.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.149 α = 90 b = 80.013 β = 104.43 c = 74.594 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2015-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50.01 99.9 26.6 6.2 25521
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.39 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 50.01 24021 1246 99.69 0.17103 0.16771 0.1709 0.23281 0.2294 RANDOM 44.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.34 -0.17 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.792 r_dihedral_angle_4_deg 15.313 r_dihedral_angle_3_deg 13.548 r_long_range_B_refined 7.388 r_long_range_B_other 7.386 r_dihedral_angle_1_deg 6.712 r_scangle_other 4.963 r_mcangle_it 4.103 r_mcangle_other 4.103 r_scbond_other 3.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.792 r_dihedral_angle_4_deg 15.313 r_dihedral_angle_3_deg 13.548 r_long_range_B_refined 7.388 r_long_range_B_other 7.386 r_dihedral_angle_1_deg 6.712 r_scangle_other 4.963 r_mcangle_it 4.103 r_mcangle_other 4.103 r_scbond_other 3.072 r_scbond_it 3.071 r_mcbond_it 2.632 r_mcbond_other 2.631 r_angle_refined_deg 1.395 r_angle_other_deg 0.926 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5418 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing