☰ Navigation Tabs
Crystal Structure of human DPP-IV in complex with HL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8 289 100mM Tris pH 8, 18% PEG 3350, 200mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.7 54.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.36 α = 90 b = 126.82 β = 99.95 c = 112.62 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97852 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 57.4 94.8 4.9 3.3 44595
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.75 55.11 42328 2248 94.73 0.23813 0.23499 0.2365 0.29803 0.2943 RANDOM 33.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.78 0.07 0.15 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.857 r_dihedral_angle_4_deg 13.611 r_dihedral_angle_3_deg 13.355 r_dihedral_angle_1_deg 5.794 r_long_range_B_refined 2.687 r_long_range_B_other 2.682 r_mcangle_it 1.649 r_mcangle_other 1.649 r_scangle_other 1.127 r_angle_refined_deg 0.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.857 r_dihedral_angle_4_deg 13.611 r_dihedral_angle_3_deg 13.355 r_dihedral_angle_1_deg 5.794 r_long_range_B_refined 2.687 r_long_range_B_other 2.682 r_mcangle_it 1.649 r_mcangle_other 1.649 r_scangle_other 1.127 r_angle_refined_deg 0.952 r_mcbond_it 0.909 r_mcbond_other 0.909 r_angle_other_deg 0.675 r_scbond_it 0.605 r_scbond_other 0.604 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11914 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing