5L3L
D11 bound IGF-II
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
| 2 | 3D CBCA(CO)NH | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
| 3 | 3D HNCACB | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
| 4 | 3D HNCO | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
| 5 | 3D HN(CA)CO | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
| 6 | 3D HCCH-TOCSY | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 600 |
| 7 | 3D 1H-15N NOESY | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 850 |
| 8 | 3D 1H-13C NOESY | 20 uM d4 acetic acid | 90% H2O/10% D2O | 0 | 4.2 | 1 atm | 308 | Bruker AVANCE III 850 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 600 |
| 2 | Bruker | AVANCE III | 850 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | YASARA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | Bruker Biospin | |
| 2 | processing | TopSpin | Bruker Biospin | |
| 3 | chemical shift assignment | Sparky | Goddard | |
| 4 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 5 | refinement | YASARA | Hoegenauer, Koraimann, Kungl, Vriend | |
