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Horse L type ferritin iron loaded for 60 minutes
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F32
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 297 80 mM Cd(NO3)2, 80 mM ammonium sulfate, and 200 mM sodium acetate pH 5
Crystal Properties Matthews coefficient Solvent content 3.17 61.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.35 α = 90 b = 181.35 β = 90 c = 181.35 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.722 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.22 23.61 99.9 0.12 12.6 10.5 13146 2 14.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.34 100 0.38 4.9 10.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3F32 2.22 23.61 12489 656 99.75 0.16752 0.16453 0.1665 0.22388 0.227 RANDOM 28.347
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 43.35 r_dihedral_angle_2_deg 36.751 r_sphericity_bonded 23.95 r_dihedral_angle_4_deg 21.943 r_dihedral_angle_3_deg 15.691 r_long_range_B_refined 8.567 r_dihedral_angle_1_deg 5.342 r_scbond_it 4.224 r_mcangle_it 3.733 r_mcbond_it 2.258
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 43.35 r_dihedral_angle_2_deg 36.751 r_sphericity_bonded 23.95 r_dihedral_angle_4_deg 21.943 r_dihedral_angle_3_deg 15.691 r_long_range_B_refined 8.567 r_dihedral_angle_1_deg 5.342 r_scbond_it 4.224 r_mcangle_it 3.733 r_mcbond_it 2.258 r_angle_refined_deg 1.625 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1364 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling MOLREP phasing