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Fragment-based inhibitors of Lipoprotein associated Phospholipase A2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 28.0%w/v PEG 3350, 0.1M HEPES/NaOHpH=7.4, 1.3M NaCl
Crystal Properties Matthews coefficient Solvent content 2.28 46.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.768 α = 90 b = 91.276 β = 112.81 c = 48.106 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2011-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 42.38 98 0.095 8.1 2.5 22893
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.19 92.1 0.558 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.11 42.38 21300 1143 98 0.19724 0.19415 0.1988 0.25538 0.2568 RANDOM 36.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 1.24 -2.7 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.821 r_dihedral_angle_4_deg 16.753 r_dihedral_angle_3_deg 14.698 r_dihedral_angle_1_deg 6.521 r_long_range_B_refined 2.283 r_angle_refined_deg 1.415 r_angle_other_deg 1.389 r_scbond_it 1.194 r_scbond_other 1.193 r_mcbond_it 1.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.821 r_dihedral_angle_4_deg 16.753 r_dihedral_angle_3_deg 14.698 r_dihedral_angle_1_deg 6.521 r_long_range_B_refined 2.283 r_angle_refined_deg 1.415 r_angle_other_deg 1.389 r_scbond_it 1.194 r_scbond_other 1.193 r_mcbond_it 1.122 r_mcbond_other 1.121 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_bond_other_d 0.002 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2978 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing