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Computationally designed functional antibody
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 18% (w/v) PEG-MME 2000, 100mM PCTP pH4.5
Crystal Properties Matthews coefficient Solvent content 2.47 50.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.24 α = 90 b = 199.98 β = 96.42 c = 76.35 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2014-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 75.87 96.5 13.7 3.1 86657
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.01 74.4 0.47 0.587 1.1 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.96 75.87 82363 4249 96.43 0.20151 0.19905 0.2081 0.24974 0.2517 RANDOM 52.525
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.13 -0.15 -2.67 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.37 r_dihedral_angle_4_deg 17.88 r_dihedral_angle_3_deg 15.653 r_long_range_B_refined 10.14 r_long_range_B_other 10.14 r_dihedral_angle_1_deg 7.389 r_scangle_other 7.315 r_mcangle_it 6.741 r_mcangle_other 6.74 r_scbond_it 5.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.37 r_dihedral_angle_4_deg 17.88 r_dihedral_angle_3_deg 15.653 r_long_range_B_refined 10.14 r_long_range_B_other 10.14 r_dihedral_angle_1_deg 7.389 r_scangle_other 7.315 r_mcangle_it 6.741 r_mcangle_other 6.74 r_scbond_it 5.047 r_scbond_other 5.046 r_mcbond_it 4.76 r_mcbond_other 4.759 r_angle_refined_deg 1.842 r_angle_other_deg 1.39 r_chiral_restr 0.117 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8244 Nucleic Acid Atoms Solvent Atoms 678 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing