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CRYSTAL STRUCTURE OF STREPTAVIDIN WITH PEPTIDE RDPAPAWAHGGG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 0.2M Ammonium acetate
0.1M Sodium acetate pH 4
15% PEG4000
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.81 α = 90 b = 84.733 β = 99.4 c = 58.497 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99992 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 57.8 96.7 0.031 0.999 15.2 3.17 167056
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.2 90.5 0.28 0.388
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 57.78 167056 8727 96.68 0.13551 0.13462 0.1343 0.15291 0.1527 RANDOM 14.813
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.39 -0.32 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.849 r_sphericity_free 19.362 r_dihedral_angle_4_deg 18.213 r_dihedral_angle_3_deg 10.396 r_sphericity_bonded 7.306 r_dihedral_angle_1_deg 7.01 r_long_range_B_refined 2.169 r_long_range_B_other 1.825 r_angle_refined_deg 1.332 r_scangle_other 1.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.849 r_sphericity_free 19.362 r_dihedral_angle_4_deg 18.213 r_dihedral_angle_3_deg 10.396 r_sphericity_bonded 7.306 r_dihedral_angle_1_deg 7.01 r_long_range_B_refined 2.169 r_long_range_B_other 1.825 r_angle_refined_deg 1.332 r_scangle_other 1.235 r_mcangle_it 1.207 r_mcangle_other 1.206 r_scbond_it 0.995 r_scbond_other 0.995 r_rigid_bond_restr 0.978 r_mcbond_it 0.891 r_mcbond_other 0.89 r_angle_other_deg 0.869 r_chiral_restr 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3834 Nucleic Acid Atoms Solvent Atoms 637 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing