5NC3

Crystal structure of the ferric enterobactin receptor (PfeA) from Pseudomonas aeruginosa in complex with the tris-catechol vector


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION294PEG 8000 ADA Magnesium acetate pH 6.5
Crystal Properties
Matthews coefficientSolvent content
3.463.83

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 86.697α = 90
b = 155.171β = 90
c = 77.796γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152016-02-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.97623ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5777.899.70.0460.99922.17.334110
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.572.6699.31.1480.7561.57.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.5777.832378172899.730.221030.218810.26285RANDOM97.309
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.378.31-4.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.292
r_dihedral_angle_4_deg16.796
r_dihedral_angle_3_deg15.489
r_long_range_B_refined10.402
r_long_range_B_other10.401
r_dihedral_angle_1_deg7.94
r_scangle_other7.746
r_mcangle_other6.465
r_mcangle_it6.464
r_scbond_it5.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.292
r_dihedral_angle_4_deg16.796
r_dihedral_angle_3_deg15.489
r_long_range_B_refined10.402
r_long_range_B_other10.401
r_dihedral_angle_1_deg7.94
r_scangle_other7.746
r_mcangle_other6.465
r_mcangle_it6.464
r_scbond_it5.6
r_scbond_other5.6
r_mcbond_it4.798
r_mcbond_other4.797
r_angle_refined_deg1.409
r_angle_other_deg0.676
r_chiral_restr0.087
r_bond_refined_d0.012
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5421
Nucleic Acid Atoms
Solvent Atoms1
Heterogen Atoms51

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing