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Junin virus GP1 glycoprotein in complex with an antibody Fab fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 20 % (v/v) 2-propanol, 20 % (w/v) PEG 4000, 0.1 M tri-Sodium Citrate (pH 5.6)
Crystal Properties Matthews coefficient Solvent content 2.71 54.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.09 α = 90 b = 101.91 β = 90 c = 147.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F Kirkpatrick Baez (KB) bimorph mirror pair for horizontal and vertical focussing 2015-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50.93 99.7 0.131 0.998 15.6 11.9 124898
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 99.6 1.78 0.669 1.7 12
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 50.93 118415 6121 99.37 0.1858 0.1845 0.1924 0.2099 0.216 RANDOM 36.176
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 -1.99 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.256 r_dihedral_angle_4_deg 18.287 r_dihedral_angle_3_deg 11.827 r_dihedral_angle_1_deg 8.904 r_angle_refined_deg 1.338 r_angle_other_deg 0.872 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.256 r_dihedral_angle_4_deg 18.287 r_dihedral_angle_3_deg 11.827 r_dihedral_angle_1_deg 8.904 r_angle_refined_deg 1.338 r_angle_other_deg 0.872 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8935 Nucleic Acid Atoms Solvent Atoms 900 Heterogen Atoms 309
Software Software Software Name Purpose xia2 data reduction PHASER phasing Coot model building REFMAC refinement PDB_EXTRACT data extraction XDS data reduction xia2 data scaling