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Thr12 Phosphorylated Ubiquitin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.2 291.15 20% (v/v) ethanol, 20% (w/v) PEG-1000, 0.1M Phosphate-citrate pH 4.2
Crystal Properties Matthews coefficient Solvent content 1.58 22.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.46 α = 90 b = 24.74 β = 113.17 c = 47.65 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97199 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.07 43.81 95.6 0.087 7.5 2.9 22954
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.07 1.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.07 43.81 21851 1103 95.13 0.13092 0.12905 0.1309 0.16653 0.1308 RANDOM 16.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 -0.36 -0.84 0.04
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 40.109 r_sphericity_free 38.529 r_dihedral_angle_2_deg 30.112 r_long_range_B_refined 19.515 r_long_range_B_other 19.486 r_dihedral_angle_3_deg 15.25 r_dihedral_angle_4_deg 14.835 r_dihedral_angle_1_deg 7.429 r_rigid_bond_restr 7.268 r_scangle_other 4.99
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 40.109 r_sphericity_free 38.529 r_dihedral_angle_2_deg 30.112 r_long_range_B_refined 19.515 r_long_range_B_other 19.486 r_dihedral_angle_3_deg 15.25 r_dihedral_angle_4_deg 14.835 r_dihedral_angle_1_deg 7.429 r_rigid_bond_restr 7.268 r_scangle_other 4.99 r_mcangle_it 4.889 r_mcangle_other 4.887 r_scbond_it 4.442 r_scbond_other 4.437 r_mcbond_it 3.504 r_mcbond_other 3.314 r_angle_refined_deg 3.261 r_angle_other_deg 1.8 r_chiral_restr 0.19 r_bond_refined_d 0.037 r_gen_planes_refined 0.013 r_gen_planes_other 0.01 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 602 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement Coot model building PHASER phasing iMOSFLM data reduction Aimless data scaling